GENOME ANALYSIS RESPORT

Data used in this analysis

In this experiment the start set data are: • Problem genomes, that are complete genome for probiotic Shewanella.sp Pdp11 and scaffold for SdM1, SdM2, SH4, SH12, SH6, SH9 strains • 16S RNA gene sequence (ab1 file)

GENERAL DESCRIPTION

This resport show all the genome analysis information that included: • 16S RNA identification • Complete genome annotation by Dfast Tool • Genome comparison with other complete shewanella genomes described on NCBI asignation by Pyani (https://github.com/widdowquinn/pyani) and Synteny blocks comparison Sibelia • Tranposon identification (Tp) • Genomic island identification (GIs) • Genome comparison with shewanella pathogenic strains by Tarsynflow (https://github.com/seoanezonjic/TarSynFlow)

The taxonomy identification of problem strains as Shewanella.sp was based on Silva Taxonomy results (https://www.arb-silva.de/documentation/silva-taxonomy/). The species was identified by blastn of 16S RNA gene and the problematic strain genomes comparison with 120 complete genomes described on NCBI database. The complete genome of Shewanella.sp Pdp11 and partial genome of pathogenic and saprofit strains of shewanella were annotated using Dfast tool, by Clusters of Orthologous Groups (COG) and the number of genes asociated to categories were determinated. The transposons has been detected by ISEScan tool (https://github.com/xiezhq/ISEScan) which was complemented with tp_finder workflow for transposase and disrupt protein identification. The genomic islands were identify using IslandViewer 4 software, by API option. The genome comparison of Shewanella.sp Pdp11 and pathogenic strains allow us to identified the specific genes of pathogenic strains and their absent in probiotic.

16S RNA

The Table indicated the 16S RNA analysis of problem genomes was carry out by blatn. The top 10 for each strain with high identity and coverage value.

Ref strain identity coverage
Pdp11_1492R NR_178284.1_Shewanella_arctica 99.580 100
Pdp11_1492R NR_113967.1_Shewanella_hafniensis 99.055 100
Pdp11_1492R NR_041296.1_Shewanella_hafniensis 99.160 100
Pdp11_1492R NR_108852.1_Shewanella_seohaensis 99.160 100
Pdp11_1492R NR_044863.1_Shewanella_putrefaciens 98.950 100
Pdp11_1492R NR_119141.1_Shewanella_putrefaciens 98.845 100
Pdp11_1492R NR_025267.1_Shewanella_baltica 98.847 100
Pdp11_1492R NR_113582.1_Shewanella_putrefaciens 98.424 100
Pdp11_1492R NR_041299.1_Shewanella_morhuae 98.531 100
Pdp11_1492R NR_113968.1_Shewanella_morhuae 98.531 100
Pdp11_1492R NR_116732.1_Shewanella_xiamenensis 98.531 100
Pdp11_1492R NR_041298.1_Shewanella_glacialipiscicola 98.323 100
Pdp11_1492R NR_104770.1_Shewanella_profunda 98.321 100
Pdp11_1492R NR_114022.1_Shewanella_glacialipiscicola 98.323 100
Pdp11_1492R NR_025610.1_Shewanella_decolorationis 98.214 100
Pdp11_1492R NR_044418.1_Shewanella_basaltis 98.115 100
Pdp11_1492R NR_114233.1_Shewanella_decolorationis 97.689 100
Pdp11_1492R NR_074798.1_Shewanella_oneidensis 98.113 100
Pdp11_1492R NR_036917.1_Shewanella_oneidensis 98.008 100
Pdp11_1492R NR_153722.1_Shewanella_inventionis 97.799 100
Pdp11_1492R NR_115229.1_Shewanella_profunda 97.799 100
Pdp11_1492R NR_074842.1_Shewanella_amazonensis 97.787 99
Pdp11_1492R NR_179009.1_Shewanella_litoralis 97.694 100
Pdp11_1492R NR_149298.1_Shewanella_algicola 97.589 100
Pdp11_1492R NR_179059.1_Shewanella_ulleungensis 97.592 100
Pdp11_1492R NR_181297.1_Shewanella_litoralis 97.592 100
Pdp11_1492R NR_179797.1_Shewanella_saliphila 97.487 100
Pdp11_1492R NR_181296.1_Shewanella_ulleungensis 97.388 100
Pdp11_1492R NR_041297.1_Shewanella_algidipiscicola 97.471 99
Pdp11_1492R NR_114023.1_Shewanella_algidipiscicola 97.471 99
Pdp11_1492R NR_181295.1_Shewanella_saliphila 97.382 100
Pdp11_1492R NR_025443.1_Shewanella_livingstonensis 97.272 100
Pdp11_1492R NR_042710.1_Shewanella_vesiculosa 97.272 100
Pdp11_1492R NR_043074.1_Shewanella_colwelliana 97.366 99
Pdp11_1492R NR_117528.1_Shewanella_frigidimarina 97.272 100
Pdp11_1492R NR_180147.1_Shewanella_psychromarinicola 97.272 100
Pdp11_1492R NR_180301.1_Shewanella_psychromarinicola 97.272 100
Pdp11_1492R NR_029070.1_Shewanella_gaetbuli 97.062 100
Pdp11_1492R NR_044134.1_Shewanella_algae 97.155 99
Pdp11_1492R NR_044453.1_Shewanella_marina 97.158 99
Pdp11_1492R NR_074813.1_Shewanella_denitrificans 97.065 100
Pdp11_1492R NR_117770.1_Shewanella_algae 97.155 99
Pdp11_1492R NR_135728.1_Shewanella_aestuarii 96.957 100
Pdp11_1492R NR_181444.1_Shewanella_cyperi 96.852 100
Pdp11_1492R NR_181445.1_Shewanella_sedimentimangrovi 96.855 100
Pdp11_1492R NR_118866.1_Shewanella_algae 96.947 99
Pdp11_1492R NR_027556.1_Shewanella_denitrificans 96.646 100
Pdp11_1492R NR_024792.1_Shewanella_schlegeliana 96.842 99
Pdp11_1492R NR_040951.1_Shewanella_kaireitica 96.842 99
Pdp11_1492R NR_041290.1_Shewanella_abyssi 96.839 99
Pdp11_1492R NR_041292.1_Shewanella_pneumatophori 96.842 99
Pdp11_1492R NR_117771.1_Shewanella_algae 96.842 99
Pdp11_1492R NR_041913.1_Shewanella_japonica 96.839 99
Pdp11_1492R NR_114236.1_Shewanella_algae 96.737 99
Pdp11_1492R NR_025793.1_Shewanella_marisflavi 96.733 99
Pdp11_1492R NR_108899.1_Shewanella_indica 96.740 99
Pdp11_1492R NR_159221.1_Shewanella_carassii 96.740 99
Pdp11_1492R NR_179012.1_Shewanella_submarina 96.740 99
Pdp11_1492R NR_028672.1_Shewanella_amazonensis 96.632 99
Pdp11_1492R NR_025684.1_Shewanella_waksmanii 96.628 99
Pdp11_1492R NR_024791.1_Shewanella_marinintestina 96.632 99
Pdp11_1492R NR_024793.1_Shewanella_sairae 96.632 99
Pdp11_1492R NR_074738.1_Shewanella_piezotolerans 96.632 99
Pdp11_1492R NR_074821.1_Shewanella_pealeana 96.632 99
Pdp11_1492R NR_074822.1_Shewanella_halifaxensis 96.632 99
Pdp11_1492R NR_169446.1_Shewanella_khirikhana 96.635 99
Pdp11_1492R NR_169447.1_Shewanella_khirikhana 96.635 99
Pdp11_1492R NR_117272.1_Shewanella_algae 96.635 99
Pdp11_1492R NR_137217.1_Shewanella_electrodiphila 96.425 99
Pdp11_1492R NR_026057.1_Shewanella_frigidimarina 96.222 100
Pdp11_1492R NR_025123.1_Shewanella_olleyana 96.417 99
Pdp11_1492R NR_118420.1_Shewanella_litorisediminis 96.425 99
Pdp11_1492R NR_028673.1_Shewanella_algae 96.699 99
Pdp11_1492R NR_025195.1_Shewanella_fidelis 96.320 99
Pdp11_1492R NR_114282.1_Shewanella_chilikensis 96.324 99
Pdp11_1492R NR_117772.1_Shewanella_chilikensis 96.324 99
Pdp11_1492R NR_169448.1_Shewanella_litorisediminis 96.320 99
Pdp11_1492R NR_180615.1_Shewanella_polaris 96.222 100
Pdp11_1492R NR_116537.1_Shewanella_corallii 96.211 99
Pdp11_1492R NR_151921.1_Shewanella_gelidii 96.118 100
Pdp11_1492R NR_025012.1_Shewanella_japonica 96.105 99
Pdp11_1492R NR_114234.1_Shewanella_japonica 96.105 99
Pdp11_1492R NR_042173.1_Shewanella_psychrophila 96.017 99
Pdp11_1492R NR_157009.1_Shewanella_intestini 95.908 100
Pdp11_1492R NR_026058.1_Shewanella_gelidimarina 95.895 99
Pdp11_1492R NR_026217.1_Shewanella_benthica 95.684 99
Pdp11_1492R NR_181523.1_Shewanella_yunxiaonensis 95.798 100
Pdp11_1492R NR_116906.1_Shewanella_chilikensis 95.820 99
Pdp11_1492R NR_025848.1_Shewanella_violacea 95.789 99
Pdp11_1492R NR_040950.1_Shewanella_surugensis 95.794 99
Pdp11_1492R NR_074924.1_Shewanella_violacea 95.789 99
Pdp11_1492R NR_181443.1_Shewanella_avicenniae 95.785 99
Pdp11_1492R NR_074819.1_Shewanella_sediminis 95.684 99
Pdp11_1492R NR_117116.1_Shewanella_sediminis 95.684 99
Pdp11_1492R NR_179967.1_Shewanella_eurypsychrophilus 95.684 99
Pdp11_1492R NR_180985.1_Shewanella_insulae 95.689 99
Pdp11_1492R NR_043617.1_Shewanella_irciniae 95.593 100
Pdp11_1492R NR_180331.1_Shewanella_maritima 95.593 100
Pdp11_1492R NR_114421.1_Shewanella_pealeana 95.579 99
Pdp11_1492R NR_042846.1_Shewanella_donghaensis 95.488 99
Pdp11_1492R NR_108559.1_Shewanella_dokdonensis 95.278 100
Pdp11_1492R NR_178396.1_Shewanella_marinisediminis 95.373 99
Pdp11_1492R NR_179966.1_Shewanella_psychropiezotolerans 95.368 99
Pdp11_1492R NR_043689.1_Shewanella_loihica 95.268 99
Pdp11_1492R NR_042174.1_Shewanella_piezotolerans 95.368 99
Pdp11_1492R NR_074815.1_Shewanella_loihica 95.268 99
Pdp11_1492R NR_114412.1_Shewanella_woodyi 95.058 99
Pdp11_1492R NR_074846.1_Shewanella_woodyi 95.058 99
Pdp11_1492R NR_114281.1_Shewanella_fodinae 94.864 100
Pdp11_1492R NR_116902.1_Shewanella_fodinae 94.974 100
Pdp11_1492R NR_136801.1_Shewanella_mangrovi 95.047 99
Pdp11_1492R NR_025794.1_Shewanella_aquimarina 95.058 99
Pdp11_1492R NR_114050.1_Shewanella_hanedai 94.526 99
Pdp11_1492R NR_037072.1_Shewanella_hanedai 94.316 99
Pdp11_1492R NR_042996.1_Shewanella_atlantica 96.076 94
Pdp11_1492R NR_042995.1_Shewanella_halifaxensis 96.280 93
Pdp11_1492R NR_181814.1_Shewanella_nanhaiensis 94.223 99
Pdp11_1492R NR_042994.1_Shewanella_canadensis 95.378 93
Pdp11_1492R NR_115272.1_Shewanella_sediminis 95.367 93
Pdp11_1492R NR_115663.1_Shewanella_hanedai 94.254 95
Pdp11_1492R NR_118867.1_Shewanella_hanedai 88.772 99
SdM1_1492R NR_108852.1_Shewanella_seohaensis 99.483 100
SdM1_1492R NR_178284.1_Shewanella_arctica 99.353 100
SdM1_1492R NR_044863.1_Shewanella_putrefaciens 99.224 100
SdM1_1492R NR_119141.1_Shewanella_putrefaciens 98.965 100
SdM1_1492R NR_113967.1_Shewanella_hafniensis 98.706 100
SdM1_1492R NR_041296.1_Shewanella_hafniensis 98.836 100
SdM1_1492R NR_113582.1_Shewanella_putrefaciens 98.571 99
SdM1_1492R NR_116732.1_Shewanella_xiamenensis 98.708 100
SdM1_1492R NR_036917.1_Shewanella_oneidensis 98.452 100
SdM1_1492R NR_025267.1_Shewanella_baltica 98.452 100
SdM1_1492R NR_074798.1_Shewanella_oneidensis 98.452 100
SdM1_1492R NR_104770.1_Shewanella_profunda 98.450 100
SdM1_1492R NR_114233.1_Shewanella_decolorationis 98.060 100
SdM1_1492R NR_025610.1_Shewanella_decolorationis 98.318 100
SdM1_1492R NR_041299.1_Shewanella_morhuae 98.320 100
SdM1_1492R NR_113968.1_Shewanella_morhuae 98.320 100
SdM1_1492R NR_041298.1_Shewanella_glacialipiscicola 98.194 100
SdM1_1492R NR_114022.1_Shewanella_glacialipiscicola 98.194 100
SdM1_1492R NR_043074.1_Shewanella_colwelliana 98.187 99
SdM1_1492R NR_074842.1_Shewanella_amazonensis 98.057 99
SdM1_1492R NR_153722.1_Shewanella_inventionis 98.307 99
SdM1_1492R NR_041297.1_Shewanella_algidipiscicola 97.927 99
SdM1_1492R NR_114023.1_Shewanella_algidipiscicola 97.927 99
SdM1_1492R NR_115229.1_Shewanella_profunda 97.933 100
SdM1_1492R NR_044418.1_Shewanella_basaltis 98.049 99
SdM1_1492R NR_024791.1_Shewanella_marinintestina 97.542 99
SdM1_1492R NR_024792.1_Shewanella_schlegeliana 97.542 99
SdM1_1492R NR_024793.1_Shewanella_sairae 97.542 99
SdM1_1492R NR_040951.1_Shewanella_kaireitica 97.542 99
SdM1_1492R NR_041292.1_Shewanella_pneumatophori 97.542 99
SdM1_1492R NR_074821.1_Shewanella_pealeana 97.542 99
SdM1_1492R NR_074822.1_Shewanella_halifaxensis 97.542 99
SdM1_1492R NR_025793.1_Shewanella_marisflavi 97.409 99
SdM1_1492R NR_029070.1_Shewanella_gaetbuli 97.653 99
SdM1_1492R NR_179797.1_Shewanella_saliphila 97.659 99
SdM1_1492R NR_181295.1_Shewanella_saliphila 97.656 99
SdM1_1492R NR_025684.1_Shewanella_waksmanii 97.280 99
SdM1_1492R NR_041290.1_Shewanella_abyssi 97.280 99
SdM1_1492R NR_044453.1_Shewanella_marina 97.287 99
SdM1_1492R NR_149298.1_Shewanella_algicola 97.526 99
SdM1_1492R NR_041913.1_Shewanella_japonica 97.520 99
SdM1_1492R NR_179009.1_Shewanella_litoralis 97.526 99
SdM1_1492R NR_181297.1_Shewanella_litoralis 97.526 99
SdM1_1492R NR_151921.1_Shewanella_gelidii 97.158 100
SdM1_1492R NR_028672.1_Shewanella_amazonensis 97.154 99
SdM1_1492R NR_135728.1_Shewanella_aestuarii 97.392 99
SdM1_1492R NR_179059.1_Shewanella_ulleungensis 97.399 99
SdM1_1492R NR_181296.1_Shewanella_ulleungensis 97.399 99
SdM1_1492R NR_137217.1_Shewanella_electrodiphila 97.139 99
SdM1_1492R NR_025123.1_Shewanella_olleyana 97.139 99
SdM1_1492R NR_074813.1_Shewanella_denitrificans 96.774 100
SdM1_1492R NR_025443.1_Shewanella_livingstonensis 97.001 99
SdM1_1492R NR_040950.1_Shewanella_surugensis 96.770 99
SdM1_1492R NR_042710.1_Shewanella_vesiculosa 97.001 99
SdM1_1492R NR_044134.1_Shewanella_algae 96.762 99
SdM1_1492R NR_074738.1_Shewanella_piezotolerans 96.766 99
SdM1_1492R NR_108899.1_Shewanella_indica 96.770 99
SdM1_1492R NR_117770.1_Shewanella_algae 96.762 99
SdM1_1492R NR_159221.1_Shewanella_carassii 96.770 99
SdM1_1492R NR_117528.1_Shewanella_frigidimarina 97.001 99
SdM1_1492R NR_180147.1_Shewanella_psychromarinicola 97.001 99
SdM1_1492R NR_180301.1_Shewanella_psychromarinicola 97.001 99
SdM1_1492R NR_042173.1_Shewanella_psychrophila 96.766 99
SdM1_1492R NR_181445.1_Shewanella_sedimentimangrovi 97.237 98
SdM1_1492R NR_169446.1_Shewanella_khirikhana 96.641 99
SdM1_1492R NR_169447.1_Shewanella_khirikhana 96.641 99
SdM1_1492R NR_181444.1_Shewanella_cyperi 97.226 98
SdM1_1492R NR_179012.1_Shewanella_submarina 96.512 99
SdM1_1492R NR_180615.1_Shewanella_polaris 96.741 99
SdM1_1492R NR_027556.1_Shewanella_denitrificans 96.263 100
SdM1_1492R NR_074819.1_Shewanella_sediminis 96.387 99
SdM1_1492R NR_117116.1_Shewanella_sediminis 96.387 99
SdM1_1492R NR_025012.1_Shewanella_japonica 96.610 99
SdM1_1492R NR_025195.1_Shewanella_fidelis 96.382 99
SdM1_1492R NR_114234.1_Shewanella_japonica 96.610 99
SdM1_1492R NR_117771.1_Shewanella_algae 96.378 99
SdM1_1492R NR_118420.1_Shewanella_litorisediminis 96.382 99
SdM1_1492R NR_114236.1_Shewanella_algae 96.248 99
SdM1_1492R NR_157009.1_Shewanella_intestini 96.253 100
SdM1_1492R NR_026057.1_Shewanella_frigidimarina 96.349 99
SdM1_1492R NR_114421.1_Shewanella_pealeana 96.248 99
SdM1_1492R NR_169448.1_Shewanella_litorisediminis 96.253 99
SdM1_1492R NR_116537.1_Shewanella_corallii 96.114 99
SdM1_1492R NR_026058.1_Shewanella_gelidimarina 96.124 99
SdM1_1492R NR_043689.1_Shewanella_loihica 96.124 99
SdM1_1492R NR_074815.1_Shewanella_loihica 96.124 99
SdM1_1492R NR_118866.1_Shewanella_algae 96.588 98
SdM1_1492R NR_117272.1_Shewanella_algae 96.124 99
SdM1_1492R NR_180985.1_Shewanella_insulae 96.124 99
SdM1_1492R NR_025848.1_Shewanella_violacea 96.000 99
SdM1_1492R NR_074924.1_Shewanella_violacea 96.000 99
SdM1_1492R NR_028673.1_Shewanella_algae 95.860 99
SdM1_1492R NR_025794.1_Shewanella_aquimarina 95.866 99
SdM1_1492R NR_114282.1_Shewanella_chilikensis 95.742 99
SdM1_1492R NR_117772.1_Shewanella_chilikensis 95.742 99
SdM1_1492R NR_026217.1_Shewanella_benthica 95.478 99
SdM1_1492R NR_181523.1_Shewanella_yunxiaonensis 96.063 99
SdM1_1492R NR_179967.1_Shewanella_eurypsychrophilus 95.607 99
SdM1_1492R NR_043617.1_Shewanella_irciniae 95.714 99
SdM1_1492R NR_180331.1_Shewanella_maritima 96.267 97
SdM1_1492R NR_179966.1_Shewanella_psychropiezotolerans 95.337 99
SdM1_1492R NR_042174.1_Shewanella_piezotolerans 95.238 99
SdM1_1492R NR_108559.1_Shewanella_dokdonensis 95.213 99
SdM1_1492R NR_114281.1_Shewanella_fodinae 95.084 99
SdM1_1492R NR_116902.1_Shewanella_fodinae 95.220 99
SdM1_1492R NR_116906.1_Shewanella_chilikensis 95.128 99
SdM1_1492R NR_178396.1_Shewanella_marinisediminis 95.220 99
SdM1_1492R NR_042846.1_Shewanella_donghaensis 95.325 99
SdM1_1492R NR_114050.1_Shewanella_hanedai 94.974 99
SdM1_1492R NR_074846.1_Shewanella_woodyi 94.961 99
SdM1_1492R NR_114412.1_Shewanella_woodyi 94.955 99
SdM1_1492R NR_136801.1_Shewanella_mangrovi 94.948 99
SdM1_1492R NR_037072.1_Shewanella_hanedai 94.839 99
SdM1_1492R NR_181443.1_Shewanella_avicenniae 95.244 98
SdM1_1492R NR_181814.1_Shewanella_nanhaiensis 94.452 99
SdM1_1492R NR_042995.1_Shewanella_halifaxensis 97.932 87
SdM1_1492R NR_042996.1_Shewanella_atlantica 97.361 88
SdM1_1492R NR_042994.1_Shewanella_canadensis 96.750 87
SdM1_1492R NR_115272.1_Shewanella_sediminis 96.741 87
SdM1_1492R NR_115663.1_Shewanella_hanedai 95.259 90
SdM1_1492R NR_118867.1_Shewanella_hanedai 89.046 99
SdM2_1492R NR_113582.1_Shewanella_putrefaciens 99.107 100
SdM2_1492R NR_119141.1_Shewanella_putrefaciens 99.106 99
SdM2_1492R NR_044863.1_Shewanella_putrefaciens 99.018 100
SdM2_1492R NR_104770.1_Shewanella_profunda 98.839 100
SdM2_1492R NR_041296.1_Shewanella_hafniensis 98.571 100
SdM2_1492R NR_116732.1_Shewanella_xiamenensis 98.574 100
SdM2_1492R NR_178284.1_Shewanella_arctica 98.482 100
SdM2_1492R NR_115229.1_Shewanella_profunda 98.394 100
SdM2_1492R NR_025267.1_Shewanella_baltica 98.125 100
SdM2_1492R NR_074798.1_Shewanella_oneidensis 98.130 100
SdM2_1492R NR_113967.1_Shewanella_hafniensis 97.500 100
SdM2_1492R NR_036917.1_Shewanella_oneidensis 97.952 100
SdM2_1492R NR_108852.1_Shewanella_seohaensis 97.857 100
SdM2_1492R NR_025610.1_Shewanella_decolorationis 97.589 100
SdM2_1492R NR_044418.1_Shewanella_basaltis 97.326 100
SdM2_1492R NR_114233.1_Shewanella_decolorationis 96.875 100
SdM2_1492R NR_149298.1_Shewanella_algicola 97.235 100
SdM2_1492R NR_113968.1_Shewanella_morhuae 97.148 100
SdM2_1492R NR_041298.1_Shewanella_glacialipiscicola 97.143 100
SdM2_1492R NR_041299.1_Shewanella_morhuae 97.148 100
SdM2_1492R NR_114022.1_Shewanella_glacialipiscicola 97.143 100
SdM2_1492R NR_179059.1_Shewanella_ulleungensis 97.059 100
SdM2_1492R NR_179797.1_Shewanella_saliphila 96.970 100
SdM2_1492R NR_153722.1_Shewanella_inventionis 96.970 100
SdM2_1492R NR_179009.1_Shewanella_litoralis 96.975 100
SdM2_1492R NR_181296.1_Shewanella_ulleungensis 96.886 100
SdM2_1492R NR_181295.1_Shewanella_saliphila 96.881 100
SdM2_1492R NR_118866.1_Shewanella_algae 96.875 100
SdM2_1492R NR_181297.1_Shewanella_litoralis 96.800 100
SdM2_1492R NR_029070.1_Shewanella_gaetbuli 96.696 100
SdM2_1492R NR_117528.1_Shewanella_frigidimarina 96.696 100
SdM2_1492R NR_025443.1_Shewanella_livingstonensis 96.527 100
SdM2_1492R NR_042710.1_Shewanella_vesiculosa 96.527 100
SdM2_1492R NR_180147.1_Shewanella_psychromarinicola 96.435 100
SdM2_1492R NR_180301.1_Shewanella_psychromarinicola 96.435 100
SdM2_1492R NR_117771.1_Shewanella_algae 96.164 100
SdM2_1492R NR_114236.1_Shewanella_algae 96.075 100
SdM2_1492R NR_044134.1_Shewanella_algae 96.071 100
SdM2_1492R NR_074842.1_Shewanella_amazonensis 96.075 100
SdM2_1492R NR_108899.1_Shewanella_indica 96.075 100
SdM2_1492R NR_117770.1_Shewanella_algae 96.071 100
SdM2_1492R NR_117272.1_Shewanella_algae 95.989 100
SdM2_1492R NR_135728.1_Shewanella_aestuarii 95.986 100
SdM2_1492R NR_181444.1_Shewanella_cyperi 96.054 99
SdM2_1492R NR_159221.1_Shewanella_carassii 95.904 100
SdM2_1492R NR_044453.1_Shewanella_marina 95.811 100
SdM2_1492R NR_026057.1_Shewanella_frigidimarina 95.707 99
SdM2_1492R NR_074813.1_Shewanella_denitrificans 95.804 99
SdM2_1492R NR_181445.1_Shewanella_sedimentimangrovi 95.714 99
SdM2_1492R NR_169446.1_Shewanella_khirikhana 95.714 99
SdM2_1492R NR_169447.1_Shewanella_khirikhana 95.714 99
SdM2_1492R NR_028673.1_Shewanella_algae 95.629 100
SdM2_1492R NR_041913.1_Shewanella_japonica 95.536 100
SdM2_1492R NR_025012.1_Shewanella_japonica 95.446 100
SdM2_1492R NR_114234.1_Shewanella_japonica 95.446 100
SdM2_1492R NR_151921.1_Shewanella_gelidii 95.459 100
SdM2_1492R NR_157009.1_Shewanella_intestini 95.459 100
SdM2_1492R NR_169448.1_Shewanella_litorisediminis 95.455 100
SdM2_1492R NR_137217.1_Shewanella_electrodiphila 95.365 100
SdM2_1492R NR_040950.1_Shewanella_surugensis 95.455 99
SdM2_1492R NR_043074.1_Shewanella_colwelliana 95.365 100
SdM2_1492R NR_118420.1_Shewanella_litorisediminis 95.365 100
SdM2_1492R NR_027556.1_Shewanella_denitrificans 95.179 99
SdM2_1492R NR_041297.1_Shewanella_algidipiscicola 95.276 100
SdM2_1492R NR_114023.1_Shewanella_algidipiscicola 95.187 100
SdM2_1492R NR_179012.1_Shewanella_submarina 95.276 100
SdM2_1492R NR_025684.1_Shewanella_waksmanii 95.183 100
SdM2_1492R NR_180615.1_Shewanella_polaris 95.187 100
SdM2_1492R NR_024792.1_Shewanella_schlegeliana 95.187 99
SdM2_1492R NR_074738.1_Shewanella_piezotolerans 95.174 99
SdM2_1492R NR_114282.1_Shewanella_chilikensis 95.111 100
SdM2_1492R NR_117772.1_Shewanella_chilikensis 95.111 100
SdM2_1492R NR_028672.1_Shewanella_amazonensis 95.004 99
SdM2_1492R NR_041292.1_Shewanella_pneumatophori 95.094 99
SdM2_1492R NR_025793.1_Shewanella_marisflavi 95.009 100
SdM2_1492R NR_024791.1_Shewanella_marinintestina 95.004 99
SdM2_1492R NR_024793.1_Shewanella_sairae 95.004 99
SdM2_1492R NR_025123.1_Shewanella_olleyana 94.911 100
SdM2_1492R NR_043617.1_Shewanella_irciniae 94.924 100
SdM2_1492R NR_116537.1_Shewanella_corallii 94.835 100
SdM2_1492R NR_025195.1_Shewanella_fidelis 94.915 99
SdM2_1492R NR_040951.1_Shewanella_kaireitica 94.906 99
SdM2_1492R NR_179966.1_Shewanella_psychropiezotolerans 94.906 99
SdM2_1492R NR_181523.1_Shewanella_yunxiaonensis 94.915 99
SdM2_1492R NR_041290.1_Shewanella_abyssi 94.821 99
SdM2_1492R NR_180331.1_Shewanella_maritima 95.050 99
SdM2_1492R NR_116906.1_Shewanella_chilikensis 94.607 100
SdM2_1492R NR_181443.1_Shewanella_avicenniae 94.803 99
SdM2_1492R NR_026058.1_Shewanella_gelidimarina 94.558 99
SdM2_1492R NR_074821.1_Shewanella_pealeana 94.558 99
SdM2_1492R NR_074822.1_Shewanella_halifaxensis 94.558 99
SdM2_1492R NR_108559.1_Shewanella_dokdonensis 94.558 99
SdM2_1492R NR_178396.1_Shewanella_marinisediminis 94.479 100
SdM2_1492R NR_180985.1_Shewanella_insulae 94.479 100
SdM2_1492R NR_179967.1_Shewanella_eurypsychrophilus 94.464 99
SdM2_1492R NR_026217.1_Shewanella_benthica 94.270 99
SdM2_1492R NR_042846.1_Shewanella_donghaensis 94.311 100
SdM2_1492R NR_042174.1_Shewanella_piezotolerans 94.301 99
SdM2_1492R NR_136801.1_Shewanella_mangrovi 94.286 99
SdM2_1492R NR_074819.1_Shewanella_sediminis 94.217 100
SdM2_1492R NR_117116.1_Shewanella_sediminis 94.217 100
SdM2_1492R NR_025848.1_Shewanella_violacea 94.202 99
SdM2_1492R NR_043689.1_Shewanella_loihica 94.123 100
SdM2_1492R NR_074815.1_Shewanella_loihica 94.123 100
SdM2_1492R NR_074924.1_Shewanella_violacea 94.202 99
SdM2_1492R NR_042173.1_Shewanella_psychrophila 94.055 99
SdM2_1492R NR_114050.1_Shewanella_hanedai 94.029 99
SdM2_1492R NR_114412.1_Shewanella_woodyi 93.945 100
SdM2_1492R NR_025794.1_Shewanella_aquimarina 93.939 100
SdM2_1492R NR_074846.1_Shewanella_woodyi 93.950 100
SdM2_1492R NR_037072.1_Shewanella_hanedai 93.850 99
SdM2_1492R NR_114281.1_Shewanella_fodinae 93.666 99
SdM2_1492R NR_116902.1_Shewanella_fodinae 93.761 99
SdM2_1492R NR_114421.1_Shewanella_pealeana 93.666 99
SdM2_1492R NR_181814.1_Shewanella_nanhaiensis 93.067 100
SdM2_1492R NR_042996.1_Shewanella_atlantica 94.540 93
SdM2_1492R NR_115663.1_Shewanella_hanedai 94.028 94
SdM2_1492R NR_042995.1_Shewanella_halifaxensis 94.402 92
SdM2_1492R NR_042994.1_Shewanella_canadensis 94.220 92
SdM2_1492R NR_115272.1_Shewanella_sediminis 93.925 92
SdM2_1492R NR_118867.1_Shewanella_hanedai 88.620 99
SH12_1492R NR_116732.1_Shewanella_xiamenensis 99.326 100
SH12_1492R NR_074798.1_Shewanella_oneidensis 99.038 100
SH12_1492R NR_036917.1_Shewanella_oneidensis 98.845 100
SH12_1492R NR_044863.1_Shewanella_putrefaciens 98.847 100
SH12_1492R NR_113582.1_Shewanella_putrefaciens 98.463 100
SH12_1492R NR_119141.1_Shewanella_putrefaciens 98.463 100
SH12_1492R NR_041296.1_Shewanella_hafniensis 98.462 100
SH12_1492R NR_104770.1_Shewanella_profunda 98.462 100
SH12_1492R NR_025267.1_Shewanella_baltica 98.175 100
SH12_1492R NR_044418.1_Shewanella_basaltis 97.987 100
SH12_1492R NR_115229.1_Shewanella_profunda 97.983 100
SH12_1492R NR_113967.1_Shewanella_hafniensis 97.310 100
SH12_1492R NR_041299.1_Shewanella_morhuae 97.791 100
SH12_1492R NR_113968.1_Shewanella_morhuae 97.791 100
SH12_1492R NR_178284.1_Shewanella_arctica 97.793 100
SH12_1492R NR_041298.1_Shewanella_glacialipiscicola 97.695 100
SH12_1492R NR_114022.1_Shewanella_glacialipiscicola 97.695 100
SH12_1492R NR_179059.1_Shewanella_ulleungensis 97.596 100
SH12_1492R NR_153722.1_Shewanella_inventionis 97.500 100
SH12_1492R NR_149298.1_Shewanella_algicola 97.498 100
SH12_1492R NR_181296.1_Shewanella_ulleungensis 97.409 100
SH12_1492R NR_108852.1_Shewanella_seohaensis 97.406 100
SH12_1492R NR_179009.1_Shewanella_litoralis 97.406 100
SH12_1492R NR_179797.1_Shewanella_saliphila 97.308 100
SH12_1492R NR_181297.1_Shewanella_litoralis 97.220 100
SH12_1492R NR_025610.1_Shewanella_decolorationis 97.214 100
SH12_1492R NR_181295.1_Shewanella_saliphila 97.118 100
SH12_1492R NR_114233.1_Shewanella_decolorationis 96.542 100
SH12_1492R NR_025443.1_Shewanella_livingstonensis 96.737 100
SH12_1492R NR_042710.1_Shewanella_vesiculosa 96.737 100
SH12_1492R NR_180147.1_Shewanella_psychromarinicola 96.734 100
SH12_1492R NR_180301.1_Shewanella_psychromarinicola 96.734 100
SH12_1492R NR_074813.1_Shewanella_denitrificans 96.718 99
SH12_1492R NR_117528.1_Shewanella_frigidimarina 96.545 100
SH12_1492R NR_029070.1_Shewanella_gaetbuli 96.442 100
SH12_1492R NR_118866.1_Shewanella_algae 96.442 100
SH12_1492R NR_135728.1_Shewanella_aestuarii 96.346 100
SH12_1492R NR_027556.1_Shewanella_denitrificans 96.236 99
SH12_1492R NR_181445.1_Shewanella_sedimentimangrovi 95.873 100
SH12_1492R NR_181444.1_Shewanella_cyperi 95.861 99
SH12_1492R NR_074842.1_Shewanella_amazonensis 95.773 100
SH12_1492R NR_044453.1_Shewanella_marina 95.681 100
SH12_1492R NR_117771.1_Shewanella_algae 95.669 100
SH12_1492R NR_180615.1_Shewanella_polaris 95.673 100
SH12_1492R NR_026057.1_Shewanella_frigidimarina 95.485 100
SH12_1492R NR_114236.1_Shewanella_algae 95.573 100
SH12_1492R NR_044134.1_Shewanella_algae 95.577 100
SH12_1492R NR_108899.1_Shewanella_indica 95.581 100
SH12_1492R NR_117770.1_Shewanella_algae 95.577 100
SH12_1492R NR_114282.1_Shewanella_chilikensis 95.489 100
SH12_1492R NR_117772.1_Shewanella_chilikensis 95.489 100
SH12_1492R NR_169447.1_Shewanella_khirikhana 95.485 100
SH12_1492R NR_117272.1_Shewanella_algae 95.481 100
SH12_1492R NR_159221.1_Shewanella_carassii 95.398 100
SH12_1492R NR_118420.1_Shewanella_litorisediminis 95.293 100
SH12_1492R NR_169446.1_Shewanella_khirikhana 95.293 100
SH12_1492R NR_040950.1_Shewanella_surugensis 95.197 100
SH12_1492R NR_043074.1_Shewanella_colwelliana 95.197 100
SH12_1492R NR_169448.1_Shewanella_litorisediminis 95.197 100
SH12_1492R NR_114023.1_Shewanella_algidipiscicola 95.010 100
SH12_1492R NR_025012.1_Shewanella_japonica 95.441 99
SH12_1492R NR_114234.1_Shewanella_japonica 95.441 99
SH12_1492R NR_028673.1_Shewanella_algae 95.091 100
SH12_1492R NR_041297.1_Shewanella_algidipiscicola 95.101 100
SH12_1492R NR_179012.1_Shewanella_submarina 95.101 100
SH12_1492R NR_116906.1_Shewanella_chilikensis 95.033 100
SH12_1492R NR_041913.1_Shewanella_japonica 95.349 99
SH12_1492R NR_151921.1_Shewanella_gelidii 95.005 100
SH12_1492R NR_157009.1_Shewanella_intestini 95.010 100
SH12_1492R NR_024792.1_Shewanella_schlegeliana 94.914 100
SH12_1492R NR_025684.1_Shewanella_waksmanii 94.909 100
SH12_1492R NR_024791.1_Shewanella_marinintestina 94.818 100
SH12_1492R NR_024793.1_Shewanella_sairae 94.818 100
SH12_1492R NR_025793.1_Shewanella_marisflavi 94.722 100
SH12_1492R NR_025195.1_Shewanella_fidelis 94.631 100
SH12_1492R NR_074738.1_Shewanella_piezotolerans 94.621 100
SH12_1492R NR_137217.1_Shewanella_electrodiphila 94.884 99
SH12_1492R NR_028672.1_Shewanella_amazonensis 94.535 100
SH12_1492R NR_041292.1_Shewanella_pneumatophori 94.551 100
SH12_1492R NR_043617.1_Shewanella_irciniae 94.600 99
SH12_1492R NR_041290.1_Shewanella_abyssi 94.434 100
SH12_1492R NR_040951.1_Shewanella_kaireitica 94.338 100
SH12_1492R NR_180985.1_Shewanella_insulae 94.332 100
SH12_1492R NR_042846.1_Shewanella_donghaensis 94.584 99
SH12_1492R NR_180331.1_Shewanella_maritima 94.579 99
SH12_1492R NR_025123.1_Shewanella_olleyana 94.579 99
SH12_1492R NR_181523.1_Shewanella_yunxiaonensis 94.242 100
SH12_1492R NR_116537.1_Shewanella_corallii 94.146 100
SH12_1492R NR_181443.1_Shewanella_avicenniae 94.236 99
SH12_1492R NR_026058.1_Shewanella_gelidimarina 94.146 100
SH12_1492R NR_074821.1_Shewanella_pealeana 94.146 100
SH12_1492R NR_074822.1_Shewanella_halifaxensis 94.146 100
SH12_1492R NR_026217.1_Shewanella_benthica 93.870 100
SH12_1492R NR_178396.1_Shewanella_marinisediminis 94.056 100
SH12_1492R NR_043689.1_Shewanella_loihica 93.948 100
SH12_1492R NR_074815.1_Shewanella_loihica 93.948 100
SH12_1492R NR_108559.1_Shewanella_dokdonensis 93.954 100
SH12_1492R NR_179966.1_Shewanella_psychropiezotolerans 93.948 100
SH12_1492R NR_025848.1_Shewanella_violacea 93.774 100
SH12_1492R NR_074846.1_Shewanella_woodyi 93.756 100
SH12_1492R NR_074924.1_Shewanella_violacea 93.774 100
SH12_1492R NR_114412.1_Shewanella_woodyi 93.756 100
SH12_1492R NR_179967.1_Shewanella_eurypsychrophilus 93.774 100
SH12_1492R NR_025794.1_Shewanella_aquimarina 93.762 100
SH12_1492R NR_042173.1_Shewanella_psychrophila 93.613 100
SH12_1492R NR_114050.1_Shewanella_hanedai 93.678 100
SH12_1492R NR_136801.1_Shewanella_mangrovi 93.666 100
SH12_1492R NR_042174.1_Shewanella_piezotolerans 93.595 100
SH12_1492R NR_074819.1_Shewanella_sediminis 93.582 100
SH12_1492R NR_114281.1_Shewanella_fodinae 93.487 100
SH12_1492R NR_117116.1_Shewanella_sediminis 93.582 100
SH12_1492R NR_116902.1_Shewanella_fodinae 93.589 100
SH12_1492R NR_037072.1_Shewanella_hanedai 93.487 100
SH12_1492R NR_181814.1_Shewanella_nanhaiensis 93.474 100
SH12_1492R NR_114421.1_Shewanella_pealeana 93.186 100
SH12_1492R NR_042996.1_Shewanella_atlantica 94.105 93
SH12_1492R NR_115663.1_Shewanella_hanedai 93.673 94
SH12_1492R NR_042995.1_Shewanella_halifaxensis 93.958 92
SH12_1492R NR_042994.1_Shewanella_canadensis 93.659 92
SH12_1492R NR_115272.1_Shewanella_sediminis 93.333 92
SH12_1492R NR_118867.1_Shewanella_hanedai 88.337 100
SH16_1492R NR_044863.1_Shewanella_putrefaciens 99.174 100
SH16_1492R NR_178284.1_Shewanella_arctica 99.174 100
SH16_1492R NR_119141.1_Shewanella_putrefaciens 99.071 100
SH16_1492R NR_113582.1_Shewanella_putrefaciens 98.762 100
SH16_1492R NR_116732.1_Shewanella_xiamenensis 98.763 100
SH16_1492R NR_113967.1_Shewanella_hafniensis 98.452 100
SH16_1492R NR_041296.1_Shewanella_hafniensis 98.555 100
SH16_1492R NR_104770.1_Shewanella_profunda 98.557 100
SH16_1492R NR_108852.1_Shewanella_seohaensis 98.555 100
SH16_1492R NR_074798.1_Shewanella_oneidensis 98.455 100
SH16_1492R NR_036917.1_Shewanella_oneidensis 98.352 100
SH16_1492R NR_025267.1_Shewanella_baltica 98.249 100
SH16_1492R NR_115229.1_Shewanella_profunda 98.043 100
SH16_1492R NR_041299.1_Shewanella_morhuae 97.938 100
SH16_1492R NR_113968.1_Shewanella_morhuae 97.938 100
SH16_1492R NR_041298.1_Shewanella_glacialipiscicola 97.734 100
SH16_1492R NR_114022.1_Shewanella_glacialipiscicola 97.734 100
SH16_1492R NR_025610.1_Shewanella_decolorationis 97.626 100
SH16_1492R NR_044418.1_Shewanella_basaltis 97.636 100
SH16_1492R NR_114233.1_Shewanella_decolorationis 97.110 100
SH16_1492R NR_153722.1_Shewanella_inventionis 97.325 100
SH16_1492R NR_179009.1_Shewanella_litoralis 97.222 100
SH16_1492R NR_149298.1_Shewanella_algicola 97.119 100
SH16_1492R NR_179059.1_Shewanella_ulleungensis 97.122 100
SH16_1492R NR_181297.1_Shewanella_litoralis 97.122 100
SH16_1492R NR_179797.1_Shewanella_saliphila 97.020 100
SH16_1492R NR_181296.1_Shewanella_ulleungensis 96.923 100
SH16_1492R NR_181295.1_Shewanella_saliphila 96.914 100
SH16_1492R NR_025443.1_Shewanella_livingstonensis 96.804 100
SH16_1492R NR_042710.1_Shewanella_vesiculosa 96.804 100
SH16_1492R NR_074842.1_Shewanella_amazonensis 96.801 100
SH16_1492R NR_117528.1_Shewanella_frigidimarina 96.804 100
SH16_1492R NR_180147.1_Shewanella_psychromarinicola 96.804 100
SH16_1492R NR_180301.1_Shewanella_psychromarinicola 96.804 100
SH16_1492R NR_118866.1_Shewanella_algae 96.804 100
SH16_1492R NR_029070.1_Shewanella_gaetbuli 96.598 100
SH16_1492R NR_043074.1_Shewanella_colwelliana 96.594 100
SH16_1492R NR_074813.1_Shewanella_denitrificans 96.691 99
SH16_1492R NR_041297.1_Shewanella_algidipiscicola 96.491 100
SH16_1492R NR_114023.1_Shewanella_algidipiscicola 96.491 100
SH16_1492R NR_135728.1_Shewanella_aestuarii 96.495 100
SH16_1492R NR_027556.1_Shewanella_denitrificans 96.277 99
SH16_1492R NR_044134.1_Shewanella_algae 96.285 100
SH16_1492R NR_117770.1_Shewanella_algae 96.285 100
SH16_1492R NR_181444.1_Shewanella_cyperi 96.285 99
SH16_1492R NR_181445.1_Shewanella_sedimentimangrovi 96.292 100
SH16_1492R NR_044453.1_Shewanella_marina 96.186 100
SH16_1492R NR_041290.1_Shewanella_abyssi 96.078 100
SH16_1492R NR_041913.1_Shewanella_japonica 96.628 98
SH16_1492R NR_117771.1_Shewanella_algae 95.979 100
SH16_1492R NR_179012.1_Shewanella_submarina 95.984 100
SH16_1492R NR_026057.1_Shewanella_frigidimarina 95.773 100
SH16_1492R NR_114236.1_Shewanella_algae 95.876 100
SH16_1492R NR_024792.1_Shewanella_schlegeliana 95.876 100
SH16_1492R NR_040951.1_Shewanella_kaireitica 95.876 100
SH16_1492R NR_041292.1_Shewanella_pneumatophori 95.876 100
SH16_1492R NR_108899.1_Shewanella_indica 95.881 100
SH16_1492R NR_159221.1_Shewanella_carassii 95.881 100
SH16_1492R NR_025123.1_Shewanella_olleyana 96.417 98
SH16_1492R NR_025793.1_Shewanella_marisflavi 95.769 100
SH16_1492R NR_117272.1_Shewanella_algae 95.778 100
SH16_1492R NR_180615.1_Shewanella_polaris 95.773 100
SH16_1492R NR_116537.1_Shewanella_corallii 95.670 100
SH16_1492R NR_137217.1_Shewanella_electrodiphila 96.215 98
SH16_1492R NR_028672.1_Shewanella_amazonensis 95.670 100
SH16_1492R NR_025684.1_Shewanella_waksmanii 95.666 100
SH16_1492R NR_024791.1_Shewanella_marinintestina 95.670 100
SH16_1492R NR_024793.1_Shewanella_sairae 95.670 100
SH16_1492R NR_074738.1_Shewanella_piezotolerans 95.670 100
SH16_1492R NR_074821.1_Shewanella_pealeana 95.670 100
SH16_1492R NR_074822.1_Shewanella_halifaxensis 95.670 100
SH16_1492R NR_157009.1_Shewanella_intestini 95.760 99
SH16_1492R NR_169446.1_Shewanella_khirikhana 95.675 100
SH16_1492R NR_169447.1_Shewanella_khirikhana 95.675 100
SH16_1492R NR_040950.1_Shewanella_surugensis 95.572 100
SH16_1492R NR_028673.1_Shewanella_algae 95.829 99
SH16_1492R NR_114282.1_Shewanella_chilikensis 95.473 100
SH16_1492R NR_117772.1_Shewanella_chilikensis 95.473 100
SH16_1492R NR_118420.1_Shewanella_litorisediminis 95.469 100
SH16_1492R NR_151921.1_Shewanella_gelidii 95.553 99
SH16_1492R NR_025195.1_Shewanella_fidelis 95.366 100
SH16_1492R NR_169448.1_Shewanella_litorisediminis 95.366 100
SH16_1492R NR_025012.1_Shewanella_japonica 95.895 98
SH16_1492R NR_114234.1_Shewanella_japonica 95.895 98
SH16_1492R NR_026058.1_Shewanella_gelidimarina 95.155 100
SH16_1492R NR_181523.1_Shewanella_yunxiaonensis 95.150 100
SH16_1492R NR_181443.1_Shewanella_avicenniae 95.046 100
SH16_1492R NR_116906.1_Shewanella_chilikensis 94.985 100
SH16_1492R NR_043617.1_Shewanella_irciniae 95.135 99
SH16_1492R NR_042173.1_Shewanella_psychrophila 94.969 100
SH16_1492R NR_026217.1_Shewanella_benthica 94.742 100
SH16_1492R NR_074819.1_Shewanella_sediminis 94.948 100
SH16_1492R NR_117116.1_Shewanella_sediminis 94.948 100
SH16_1492R NR_180331.1_Shewanella_maritima 95.218 99
SH16_1492R NR_025848.1_Shewanella_violacea 94.845 100
SH16_1492R NR_074924.1_Shewanella_violacea 94.845 100
SH16_1492R NR_042846.1_Shewanella_donghaensis 95.278 98
SH16_1492R NR_179967.1_Shewanella_eurypsychrophilus 94.742 100
SH16_1492R NR_180985.1_Shewanella_insulae 94.748 100
SH16_1492R NR_108559.1_Shewanella_dokdonensis 94.639 100
SH16_1492R NR_114421.1_Shewanella_pealeana 94.639 100
SH16_1492R NR_179966.1_Shewanella_psychropiezotolerans 94.639 100
SH16_1492R NR_136801.1_Shewanella_mangrovi 94.427 100
SH16_1492R NR_178396.1_Shewanella_marinisediminis 94.439 100
SH16_1492R NR_043689.1_Shewanella_loihica 94.336 100
SH16_1492R NR_042174.1_Shewanella_piezotolerans 94.433 99
SH16_1492R NR_074815.1_Shewanella_loihica 94.336 100
SH16_1492R NR_114281.1_Shewanella_fodinae 94.233 100
SH16_1492R NR_116902.1_Shewanella_fodinae 94.342 100
SH16_1492R NR_114050.1_Shewanella_hanedai 94.227 100
SH16_1492R NR_114412.1_Shewanella_woodyi 94.130 100
SH16_1492R NR_074846.1_Shewanella_woodyi 94.130 100
SH16_1492R NR_025794.1_Shewanella_aquimarina 94.130 100
SH16_1492R NR_037072.1_Shewanella_hanedai 94.021 100
SH16_1492R NR_042996.1_Shewanella_atlantica 95.628 92
SH16_1492R NR_042995.1_Shewanella_halifaxensis 95.829 91
SH16_1492R NR_181814.1_Shewanella_nanhaiensis 93.313 100
SH16_1492R NR_042994.1_Shewanella_canadensis 95.152 91
SH16_1492R NR_115272.1_Shewanella_sediminis 95.141 91
SH16_1492R NR_115663.1_Shewanella_hanedai 94.475 93
SH16_1492R NR_118867.1_Shewanella_hanedai 88.592 100
SH4_1492R NR_116732.1_Shewanella_xiamenensis 99.217 100
SH4_1492R NR_074798.1_Shewanella_oneidensis 98.957 100
SH4_1492R NR_036917.1_Shewanella_oneidensis 98.783 100
SH4_1492R NR_044863.1_Shewanella_putrefaciens 98.699 100
SH4_1492R NR_041296.1_Shewanella_hafniensis 98.436 100
SH4_1492R NR_113582.1_Shewanella_putrefaciens 98.345 99
SH4_1492R NR_104770.1_Shewanella_profunda 98.262 100
SH4_1492R NR_119141.1_Shewanella_putrefaciens 98.262 99
SH4_1492R NR_025267.1_Shewanella_baltica 98.090 100
SH4_1492R NR_113967.1_Shewanella_hafniensis 97.309 100
SH4_1492R NR_115229.1_Shewanella_profunda 97.830 100
SH4_1492R NR_178284.1_Shewanella_arctica 97.834 100
SH4_1492R NR_044418.1_Shewanella_basaltis 97.817 99
SH4_1492R NR_113968.1_Shewanella_morhuae 97.396 100
SH4_1492R NR_041299.1_Shewanella_morhuae 97.396 100
SH4_1492R NR_041298.1_Shewanella_glacialipiscicola 97.309 100
SH4_1492R NR_114022.1_Shewanella_glacialipiscicola 97.309 100
SH4_1492R NR_108852.1_Shewanella_seohaensis 97.225 100
SH4_1492R NR_149298.1_Shewanella_algicola 97.458 99
SH4_1492R NR_179009.1_Shewanella_litoralis 97.463 99
SH4_1492R NR_179059.1_Shewanella_ulleungensis 97.461 99
SH4_1492R NR_153722.1_Shewanella_inventionis 97.371 99
SH4_1492R NR_181296.1_Shewanella_ulleungensis 97.290 99
SH4_1492R NR_181297.1_Shewanella_litoralis 97.293 99
SH4_1492R NR_025610.1_Shewanella_decolorationis 97.051 100
SH4_1492R NR_179797.1_Shewanella_saliphila 97.285 99
SH4_1492R NR_181295.1_Shewanella_saliphila 97.113 99
SH4_1492R NR_114233.1_Shewanella_decolorationis 96.444 100
SH4_1492R NR_025443.1_Shewanella_livingstonensis 96.853 99
SH4_1492R NR_042710.1_Shewanella_vesiculosa 96.853 99
SH4_1492R NR_180147.1_Shewanella_psychromarinicola 96.673 99
SH4_1492R NR_180301.1_Shewanella_psychromarinicola 96.673 99
SH4_1492R NR_117528.1_Shewanella_frigidimarina 96.588 99
SH4_1492R NR_029070.1_Shewanella_gaetbuli 96.497 99
SH4_1492R NR_074813.1_Shewanella_denitrificans 96.181 100
SH4_1492R NR_135728.1_Shewanella_aestuarii 96.319 99
SH4_1492R NR_118866.1_Shewanella_algae 96.397 99
SH4_1492R NR_027556.1_Shewanella_denitrificans 95.569 100
SH4_1492R NR_180615.1_Shewanella_polaris 95.888 99
SH4_1492R NR_044453.1_Shewanella_marina 95.648 99
SH4_1492R NR_074842.1_Shewanella_amazonensis 95.648 99
SH4_1492R NR_114282.1_Shewanella_chilikensis 95.652 99
SH4_1492R NR_117771.1_Shewanella_algae 95.645 99
SH4_1492R NR_117772.1_Shewanella_chilikensis 95.652 99
SH4_1492R NR_114236.1_Shewanella_algae 95.557 99
SH4_1492R NR_044134.1_Shewanella_algae 95.561 99
SH4_1492R NR_108899.1_Shewanella_indica 95.565 99
SH4_1492R NR_117770.1_Shewanella_algae 95.561 99
SH4_1492R NR_159221.1_Shewanella_carassii 95.569 99
SH4_1492R NR_026057.1_Shewanella_frigidimarina 95.538 99
SH4_1492R NR_117272.1_Shewanella_algae 95.474 99
SH4_1492R NR_181444.1_Shewanella_cyperi 95.771 98
SH4_1492R NR_116906.1_Shewanella_chilikensis 95.156 99
SH4_1492R NR_151921.1_Shewanella_gelidii 95.139 100
SH4_1492R NR_157009.1_Shewanella_intestini 95.143 100
SH4_1492R NR_169447.1_Shewanella_khirikhana 95.213 99
SH4_1492R NR_181445.1_Shewanella_sedimentimangrovi 95.526 99
SH4_1492R NR_028673.1_Shewanella_algae 95.122 99
SH4_1492R NR_118420.1_Shewanella_litorisediminis 95.126 99
SH4_1492R NR_169448.1_Shewanella_litorisediminis 95.126 99
SH4_1492R NR_179012.1_Shewanella_submarina 95.126 99
SH4_1492R NR_025012.1_Shewanella_japonica 95.192 99
SH4_1492R NR_040950.1_Shewanella_surugensis 95.035 99
SH4_1492R NR_043074.1_Shewanella_colwelliana 95.039 99
SH4_1492R NR_114234.1_Shewanella_japonica 95.192 99
SH4_1492R NR_169446.1_Shewanella_khirikhana 95.039 99
SH4_1492R NR_114023.1_Shewanella_algidipiscicola 94.865 99
SH4_1492R NR_041297.1_Shewanella_algidipiscicola 94.952 99
SH4_1492R NR_041913.1_Shewanella_japonica 95.109 99
SH4_1492R NR_024792.1_Shewanella_schlegeliana 94.870 99
SH4_1492R NR_025684.1_Shewanella_waksmanii 94.861 99
SH4_1492R NR_137217.1_Shewanella_electrodiphila 94.878 99
SH4_1492R NR_024791.1_Shewanella_marinintestina 94.783 99
SH4_1492R NR_024793.1_Shewanella_sairae 94.783 99
SH4_1492R NR_025793.1_Shewanella_marisflavi 94.691 99
SH4_1492R NR_043617.1_Shewanella_irciniae 94.769 99
SH4_1492R NR_025195.1_Shewanella_fidelis 94.526 99
SH4_1492R NR_041292.1_Shewanella_pneumatophori 94.531 99
SH4_1492R NR_074738.1_Shewanella_piezotolerans 94.430 99
SH4_1492R NR_025123.1_Shewanella_olleyana 94.430 99
SH4_1492R NR_116537.1_Shewanella_corallii 94.261 99
SH4_1492R NR_041290.1_Shewanella_abyssi 94.256 99
SH4_1492R NR_180331.1_Shewanella_maritima 94.854 98
SH4_1492R NR_180985.1_Shewanella_insulae 94.251 99
SH4_1492R NR_042846.1_Shewanella_donghaensis 94.333 99
SH4_1492R NR_040951.1_Shewanella_kaireitica 94.174 99
SH4_1492R NR_028672.1_Shewanella_amazonensis 94.113 99
SH4_1492R NR_178396.1_Shewanella_marinisediminis 94.179 99
SH4_1492R NR_181523.1_Shewanella_yunxiaonensis 94.391 99
SH4_1492R NR_108559.1_Shewanella_dokdonensis 94.092 99
SH4_1492R NR_026058.1_Shewanella_gelidimarina 94.000 99
SH4_1492R NR_074821.1_Shewanella_pealeana 94.000 99
SH4_1492R NR_074822.1_Shewanella_halifaxensis 94.000 99
SH4_1492R NR_181443.1_Shewanella_avicenniae 94.361 98
SH4_1492R NR_043689.1_Shewanella_loihica 93.902 99
SH4_1492R NR_074815.1_Shewanella_loihica 93.902 99
SH4_1492R NR_136801.1_Shewanella_mangrovi 93.913 99
SH4_1492R NR_026217.1_Shewanella_benthica 93.674 99
SH4_1492R NR_179966.1_Shewanella_psychropiezotolerans 93.913 99
SH4_1492R NR_074846.1_Shewanella_woodyi 93.821 99
SH4_1492R NR_114281.1_Shewanella_fodinae 93.750 99
SH4_1492R NR_116902.1_Shewanella_fodinae 93.842 99
SH4_1492R NR_179967.1_Shewanella_eurypsychrophilus 93.847 99
SH4_1492R NR_114412.1_Shewanella_woodyi 93.815 99
SH4_1492R NR_025848.1_Shewanella_violacea 93.761 99
SH4_1492R NR_074819.1_Shewanella_sediminis 93.761 99
SH4_1492R NR_074924.1_Shewanella_violacea 93.761 99
SH4_1492R NR_117116.1_Shewanella_sediminis 93.761 99
SH4_1492R NR_181814.1_Shewanella_nanhaiensis 93.739 99
SH4_1492R NR_025794.1_Shewanella_aquimarina 93.734 99
SH4_1492R NR_114050.1_Shewanella_hanedai 93.674 99
SH4_1492R NR_037072.1_Shewanella_hanedai 93.501 99
SH4_1492R NR_042174.1_Shewanella_piezotolerans 93.523 99
SH4_1492R NR_042173.1_Shewanella_psychrophila 93.345 99
SH4_1492R NR_114421.1_Shewanella_pealeana 93.130 99
SH4_1492R NR_042996.1_Shewanella_atlantica 94.345 92
SH4_1492R NR_115663.1_Shewanella_hanedai 93.762 93
SH4_1492R NR_042994.1_Shewanella_canadensis 93.939 91
SH4_1492R NR_042995.1_Shewanella_halifaxensis 93.833 91
SH4_1492R NR_115272.1_Shewanella_sediminis 93.548 91
SH4_1492R NR_118867.1_Shewanella_hanedai 88.118 99
SH6_1492R.fasta NR_044863.1_Shewanella_putrefaciens 99.285 100
SH6_1492R.fasta NR_119141.1_Shewanella_putrefaciens 99.081 100
SH6_1492R.fasta NR_178284.1_Shewanella_arctica 99.081 100
SH6_1492R.fasta NR_113582.1_Shewanella_putrefaciens 98.774 100
SH6_1492R.fasta NR_116732.1_Shewanella_xiamenensis 98.878 100
SH6_1492R.fasta NR_113967.1_Shewanella_hafniensis 98.570 100
SH6_1492R.fasta NR_041296.1_Shewanella_hafniensis 98.672 100
SH6_1492R.fasta NR_104770.1_Shewanella_profunda 98.673 100
SH6_1492R.fasta NR_108852.1_Shewanella_seohaensis 98.671 99
SH6_1492R.fasta NR_025267.1_Shewanella_baltica 98.369 100
SH6_1492R.fasta NR_074798.1_Shewanella_oneidensis 98.369 100
SH6_1492R.fasta NR_036917.1_Shewanella_oneidensis 98.267 100
SH6_1492R.fasta NR_115229.1_Shewanella_profunda 98.165 100
SH6_1492R.fasta NR_041299.1_Shewanella_morhuae 98.061 100
SH6_1492R.fasta NR_113968.1_Shewanella_morhuae 98.061 100
SH6_1492R.fasta NR_041298.1_Shewanella_glacialipiscicola 97.859 100
SH6_1492R.fasta NR_114022.1_Shewanella_glacialipiscicola 97.859 100
SH6_1492R.fasta NR_025610.1_Shewanella_decolorationis 97.751 99
SH6_1492R.fasta NR_044418.1_Shewanella_basaltis 97.757 99
SH6_1492R.fasta NR_114233.1_Shewanella_decolorationis 97.239 99
SH6_1492R.fasta NR_153722.1_Shewanella_inventionis 97.449 99
SH6_1492R.fasta NR_179009.1_Shewanella_litoralis 97.347 99
SH6_1492R.fasta NR_149298.1_Shewanella_algicola 97.245 99
SH6_1492R.fasta NR_179059.1_Shewanella_ulleungensis 97.248 99
SH6_1492R.fasta NR_181297.1_Shewanella_litoralis 97.248 99
SH6_1492R.fasta NR_179797.1_Shewanella_saliphila 97.146 99
SH6_1492R.fasta NR_181296.1_Shewanella_ulleungensis 97.050 99
SH6_1492R.fasta NR_181295.1_Shewanella_saliphila 97.044 99
SH6_1492R.fasta NR_025443.1_Shewanella_livingstonensis 96.936 99
SH6_1492R.fasta NR_042710.1_Shewanella_vesiculosa 96.936 99
SH6_1492R.fasta NR_074842.1_Shewanella_amazonensis 96.933 99
SH6_1492R.fasta NR_117528.1_Shewanella_frigidimarina 96.936 99
SH6_1492R.fasta NR_180147.1_Shewanella_psychromarinicola 96.936 99
SH6_1492R.fasta NR_180301.1_Shewanella_psychromarinicola 96.936 99
SH6_1492R.fasta NR_029070.1_Shewanella_gaetbuli 96.731 99
SH6_1492R.fasta NR_043074.1_Shewanella_colwelliana 96.728 99
SH6_1492R.fasta NR_118866.1_Shewanella_algae 96.920 99
SH6_1492R.fasta NR_041297.1_Shewanella_algidipiscicola 96.626 99
SH6_1492R.fasta NR_074813.1_Shewanella_denitrificans 96.633 99
SH6_1492R.fasta NR_114023.1_Shewanella_algidipiscicola 96.626 99
SH6_1492R.fasta NR_135728.1_Shewanella_aestuarii 96.629 99
SH6_1492R.fasta NR_044134.1_Shewanella_algae 96.421 99
SH6_1492R.fasta NR_117770.1_Shewanella_algae 96.421 99
SH6_1492R.fasta NR_027556.1_Shewanella_denitrificans 96.224 99
SH6_1492R.fasta NR_044453.1_Shewanella_marina 96.323 99
SH6_1492R.fasta NR_041290.1_Shewanella_abyssi 96.217 99
SH6_1492R.fasta NR_181445.1_Shewanella_sedimentimangrovi 96.403 99
SH6_1492R.fasta NR_117771.1_Shewanella_algae 96.118 99
SH6_1492R.fasta NR_179012.1_Shewanella_submarina 96.122 99
SH6_1492R.fasta NR_181444.1_Shewanella_cyperi 96.388 99
SH6_1492R.fasta NR_114236.1_Shewanella_algae 96.016 99
SH6_1492R.fasta NR_024792.1_Shewanella_schlegeliana 96.016 99
SH6_1492R.fasta NR_040951.1_Shewanella_kaireitica 96.016 99
SH6_1492R.fasta NR_041292.1_Shewanella_pneumatophori 96.016 99
SH6_1492R.fasta NR_108899.1_Shewanella_indica 96.020 99
SH6_1492R.fasta NR_159221.1_Shewanella_carassii 96.020 99
SH6_1492R.fasta NR_041913.1_Shewanella_japonica 96.012 99
SH6_1492R.fasta NR_025793.1_Shewanella_marisflavi 95.910 99
SH6_1492R.fasta NR_026057.1_Shewanella_frigidimarina 95.812 99
SH6_1492R.fasta NR_117272.1_Shewanella_algae 95.918 99
SH6_1492R.fasta NR_180615.1_Shewanella_polaris 95.914 99
SH6_1492R.fasta NR_025123.1_Shewanella_olleyana 95.812 100
SH6_1492R.fasta NR_028672.1_Shewanella_amazonensis 95.812 99
SH6_1492R.fasta NR_025684.1_Shewanella_waksmanii 95.808 99
SH6_1492R.fasta NR_024791.1_Shewanella_marinintestina 95.812 99
SH6_1492R.fasta NR_024793.1_Shewanella_sairae 95.812 99
SH6_1492R.fasta NR_074738.1_Shewanella_piezotolerans 95.812 99
SH6_1492R.fasta NR_074821.1_Shewanella_pealeana 95.812 99
SH6_1492R.fasta NR_074822.1_Shewanella_halifaxensis 95.812 99
SH6_1492R.fasta NR_157009.1_Shewanella_intestini 95.812 99
SH6_1492R.fasta NR_169446.1_Shewanella_khirikhana 95.816 99
SH6_1492R.fasta NR_169447.1_Shewanella_khirikhana 95.816 99
SH6_1492R.fasta NR_040950.1_Shewanella_surugensis 95.714 99
SH6_1492R.fasta NR_137217.1_Shewanella_electrodiphila 95.617 100
SH6_1492R.fasta NR_116537.1_Shewanella_corallii 95.608 99
SH6_1492R.fasta NR_028673.1_Shewanella_algae 95.971 99
SH6_1492R.fasta NR_114282.1_Shewanella_chilikensis 95.617 99
SH6_1492R.fasta NR_117772.1_Shewanella_chilikensis 95.617 99
SH6_1492R.fasta NR_118420.1_Shewanella_litorisediminis 95.612 99
SH6_1492R.fasta NR_151921.1_Shewanella_gelidii 95.608 99
SH6_1492R.fasta NR_025195.1_Shewanella_fidelis 95.510 99
SH6_1492R.fasta NR_169448.1_Shewanella_litorisediminis 95.510 99
SH6_1492R.fasta NR_026058.1_Shewanella_gelidimarina 95.306 100
SH6_1492R.fasta NR_025012.1_Shewanella_japonica 95.301 99
SH6_1492R.fasta NR_114234.1_Shewanella_japonica 95.301 99
SH6_1492R.fasta NR_042173.1_Shewanella_psychrophila 95.219 99
SH6_1492R.fasta NR_116906.1_Shewanella_chilikensis 95.132 99
SH6_1492R.fasta NR_181523.1_Shewanella_yunxiaonensis 95.277 99
SH6_1492R.fasta NR_043617.1_Shewanella_irciniae 95.102 100
SH6_1492R.fasta NR_074819.1_Shewanella_sediminis 95.005 100
SH6_1492R.fasta NR_117116.1_Shewanella_sediminis 95.005 100
SH6_1492R.fasta NR_026217.1_Shewanella_benthica 94.694 100
SH6_1492R.fasta NR_025848.1_Shewanella_violacea 94.903 100
SH6_1492R.fasta NR_074924.1_Shewanella_violacea 94.903 100
SH6_1492R.fasta NR_180985.1_Shewanella_insulae 94.898 99
SH6_1492R.fasta NR_181443.1_Shewanella_avicenniae 95.150 99
SH6_1492R.fasta NR_179967.1_Shewanella_eurypsychrophilus 94.801 100
SH6_1492R.fasta NR_114421.1_Shewanella_pealeana 94.791 99
SH6_1492R.fasta NR_180331.1_Shewanella_maritima 95.322 98
SH6_1492R.fasta NR_042846.1_Shewanella_donghaensis 94.705 99
SH6_1492R.fasta NR_108559.1_Shewanella_dokdonensis 94.694 100
SH6_1492R.fasta NR_136801.1_Shewanella_mangrovi 94.586 100
SH6_1492R.fasta NR_179966.1_Shewanella_psychropiezotolerans 94.592 100
SH6_1492R.fasta NR_178396.1_Shewanella_marinisediminis 94.501 100
SH6_1492R.fasta NR_114281.1_Shewanella_fodinae 94.393 100
SH6_1492R.fasta NR_116902.1_Shewanella_fodinae 94.501 100
SH6_1492R.fasta NR_043689.1_Shewanella_loihica 94.490 99
SH6_1492R.fasta NR_074815.1_Shewanella_loihica 94.490 99
SH6_1492R.fasta NR_042174.1_Shewanella_piezotolerans 94.495 99
SH6_1492R.fasta NR_114050.1_Shewanella_hanedai 94.292 100
SH6_1492R.fasta NR_114412.1_Shewanella_woodyi 94.286 99
SH6_1492R.fasta NR_074846.1_Shewanella_woodyi 94.286 99
SH6_1492R.fasta NR_025794.1_Shewanella_aquimarina 94.286 99
SH6_1492R.fasta NR_037072.1_Shewanella_hanedai 94.088 100
SH6_1492R.fasta NR_181814.1_Shewanella_nanhaiensis 93.476 99
SH6_1492R.fasta NR_042996.1_Shewanella_atlantica 95.740 91
SH6_1492R.fasta NR_042995.1_Shewanella_halifaxensis 95.941 91
SH6_1492R.fasta NR_042994.1_Shewanella_canadensis 95.265 91
SH6_1492R.fasta NR_115272.1_Shewanella_sediminis 95.254 90
SH6_1492R.fasta NR_115663.1_Shewanella_hanedai 94.586 92
SH6_1492R.fasta NR_118867.1_Shewanella_hanedai 88.720 100
SH9_1492R NR_044863.1_Shewanella_putrefaciens 99.106 100
SH9_1492R NR_119141.1_Shewanella_putrefaciens 98.833 99
SH9_1492R NR_104770.1_Shewanella_profunda 98.660 100
SH9_1492R NR_113582.1_Shewanella_putrefaciens 98.649 99
SH9_1492R NR_178284.1_Shewanella_arctica 98.569 100
SH9_1492R NR_116732.1_Shewanella_xiamenensis 98.391 100
SH9_1492R NR_115229.1_Shewanella_profunda 98.214 100
SH9_1492R NR_041296.1_Shewanella_hafniensis 98.123 100
SH9_1492R NR_036917.1_Shewanella_oneidensis 97.946 100
SH9_1492R NR_074798.1_Shewanella_oneidensis 98.036 100
SH9_1492R NR_108852.1_Shewanella_seohaensis 98.032 100
SH9_1492R NR_113967.1_Shewanella_hafniensis 97.406 100
SH9_1492R NR_025267.1_Shewanella_baltica 97.768 100
SH9_1492R NR_025610.1_Shewanella_decolorationis 97.227 100
SH9_1492R NR_041298.1_Shewanella_glacialipiscicola 97.232 100
SH9_1492R NR_114022.1_Shewanella_glacialipiscicola 97.232 100
SH9_1492R NR_044418.1_Shewanella_basaltis 97.145 99
SH9_1492R NR_114233.1_Shewanella_decolorationis 96.780 100
SH9_1492R NR_041299.1_Shewanella_morhuae 96.970 100
SH9_1492R NR_113968.1_Shewanella_morhuae 96.970 100
SH9_1492R NR_179059.1_Shewanella_ulleungensis 96.881 100
SH9_1492R NR_181296.1_Shewanella_ulleungensis 96.942 99
SH9_1492R NR_179797.1_Shewanella_saliphila 96.613 100
SH9_1492R NR_149298.1_Shewanella_algicola 96.610 100
SH9_1492R NR_181295.1_Shewanella_saliphila 96.754 99
SH9_1492R NR_153722.1_Shewanella_inventionis 96.444 100
SH9_1492R NR_179009.1_Shewanella_litoralis 96.670 99
SH9_1492R NR_181297.1_Shewanella_litoralis 96.260 99
SH9_1492R NR_029070.1_Shewanella_gaetbuli 96.154 100
SH9_1492R NR_118866.1_Shewanella_algae 96.552 98
SH9_1492R NR_025443.1_Shewanella_livingstonensis 96.078 100
SH9_1492R NR_042710.1_Shewanella_vesiculosa 96.078 100
SH9_1492R NR_117528.1_Shewanella_frigidimarina 96.068 100
SH9_1492R NR_180147.1_Shewanella_psychromarinicola 95.986 100
SH9_1492R NR_180301.1_Shewanella_psychromarinicola 95.986 100
SH9_1492R NR_044134.1_Shewanella_algae 96.043 99
SH9_1492R NR_074842.1_Shewanella_amazonensis 96.050 99
SH9_1492R NR_117770.1_Shewanella_algae 96.043 99
SH9_1492R NR_135728.1_Shewanella_aestuarii 95.807 100
SH9_1492R NR_074813.1_Shewanella_denitrificans 95.637 100
SH9_1492R NR_117771.1_Shewanella_algae 95.777 99
SH9_1492R NR_114236.1_Shewanella_algae 95.687 99
SH9_1492R NR_108899.1_Shewanella_indica 95.691 99
SH9_1492R NR_041913.1_Shewanella_japonica 95.750 99
SH9_1492R NR_117272.1_Shewanella_algae 95.601 99
SH9_1492R NR_043074.1_Shewanella_colwelliana 95.601 99
SH9_1492R NR_041297.1_Shewanella_algidipiscicola 95.512 99
SH9_1492R NR_181444.1_Shewanella_cyperi 95.898 98
SH9_1492R NR_044453.1_Shewanella_marina 95.430 99
SH9_1492R NR_027556.1_Shewanella_denitrificans 95.094 100
SH9_1492R NR_114023.1_Shewanella_algidipiscicola 95.242 99
SH9_1492R NR_026057.1_Shewanella_frigidimarina 95.085 100
SH9_1492R NR_159221.1_Shewanella_carassii 95.336 99
SH9_1492R NR_181445.1_Shewanella_sedimentimangrovi 95.644 98
SH9_1492R NR_024792.1_Shewanella_schlegeliana 95.247 99
SH9_1492R NR_028673.1_Shewanella_algae 95.238 99
SH9_1492R NR_137217.1_Shewanella_electrodiphila 95.230 99
SH9_1492R NR_041292.1_Shewanella_pneumatophori 95.161 99
SH9_1492R NR_169446.1_Shewanella_khirikhana 95.153 99
SH9_1492R NR_169447.1_Shewanella_khirikhana 95.161 99
SH9_1492R NR_180615.1_Shewanella_polaris 95.000 100
SH9_1492R NR_028672.1_Shewanella_amazonensis 94.978 99
SH9_1492R NR_024791.1_Shewanella_marinintestina 95.063 99
SH9_1492R NR_024793.1_Shewanella_sairae 95.063 99
SH9_1492R NR_025793.1_Shewanella_marisflavi 94.973 99
SH9_1492R NR_025012.1_Shewanella_japonica 95.122 99
SH9_1492R NR_114234.1_Shewanella_japonica 95.122 99
SH9_1492R NR_114282.1_Shewanella_chilikensis 94.982 99
SH9_1492R NR_117772.1_Shewanella_chilikensis 94.982 99
SH9_1492R NR_179012.1_Shewanella_submarina 94.991 99
SH9_1492R NR_025684.1_Shewanella_waksmanii 94.888 99
SH9_1492R NR_040951.1_Shewanella_kaireitica 94.879 99
SH9_1492R NR_118420.1_Shewanella_litorisediminis 94.892 99
SH9_1492R NR_151921.1_Shewanella_gelidii 94.737 100
SH9_1492R NR_157009.1_Shewanella_intestini 94.742 100
SH9_1492R NR_169448.1_Shewanella_litorisediminis 94.892 99
SH9_1492R NR_025123.1_Shewanella_olleyana 94.869 99
SH9_1492R NR_040950.1_Shewanella_surugensis 94.798 99
SH9_1492R NR_041290.1_Shewanella_abyssi 94.798 99
SH9_1492R NR_074821.1_Shewanella_pealeana 94.798 99
SH9_1492R NR_074822.1_Shewanella_halifaxensis 94.798 99
SH9_1492R NR_116537.1_Shewanella_corallii 94.718 99
SH9_1492R NR_074738.1_Shewanella_piezotolerans 94.699 99
SH9_1492R NR_116906.1_Shewanella_chilikensis 94.474 99
SH9_1492R NR_025195.1_Shewanella_fidelis 94.454 99
SH9_1492R NR_043617.1_Shewanella_irciniae 94.286 100
SH9_1492R NR_179967.1_Shewanella_eurypsychrophilus 94.255 99
SH9_1492R NR_181443.1_Shewanella_avicenniae 94.627 98
SH9_1492R NR_026217.1_Shewanella_benthica 93.986 99
SH9_1492R NR_179966.1_Shewanella_psychropiezotolerans 94.245 99
SH9_1492R NR_181523.1_Shewanella_yunxiaonensis 94.470 99
SH9_1492R NR_136801.1_Shewanella_mangrovi 94.160 99
SH9_1492R NR_025848.1_Shewanella_violacea 94.097 99
SH9_1492R NR_026058.1_Shewanella_gelidimarina 94.086 99
SH9_1492R NR_074819.1_Shewanella_sediminis 94.086 99
SH9_1492R NR_074924.1_Shewanella_violacea 94.097 99
SH9_1492R NR_117116.1_Shewanella_sediminis 94.086 99
SH9_1492R NR_042846.1_Shewanella_donghaensis 94.160 99
SH9_1492R NR_108559.1_Shewanella_dokdonensis 93.986 99
SH9_1492R NR_180985.1_Shewanella_insulae 94.002 99
SH9_1492R NR_180331.1_Shewanella_maritima 94.505 97
SH9_1492R NR_114421.1_Shewanella_pealeana 93.901 99
SH9_1492R NR_178396.1_Shewanella_marinisediminis 93.812 99
SH9_1492R NR_114281.1_Shewanella_fodinae 93.638 99
SH9_1492R NR_116902.1_Shewanella_fodinae 93.733 99
SH9_1492R NR_042173.1_Shewanella_psychrophila 93.577 99
SH9_1492R NR_043689.1_Shewanella_loihica 93.644 99
SH9_1492R NR_074815.1_Shewanella_loihica 93.644 99
SH9_1492R NR_042174.1_Shewanella_piezotolerans 93.571 99
SH9_1492R NR_114050.1_Shewanella_hanedai 93.566 99
SH9_1492R NR_074846.1_Shewanella_woodyi 93.554 99
SH9_1492R NR_114412.1_Shewanella_woodyi 93.548 99
SH9_1492R NR_025794.1_Shewanella_aquimarina 93.465 99
SH9_1492R NR_037072.1_Shewanella_hanedai 93.381 99
SH9_1492R NR_181814.1_Shewanella_nanhaiensis 93.004 99
SH9_1492R NR_042996.1_Shewanella_atlantica 94.624 91
SH9_1492R NR_042995.1_Shewanella_halifaxensis 94.701 91
SH9_1492R NR_042994.1_Shewanella_canadensis 94.204 91
SH9_1492R NR_115663.1_Shewanella_hanedai 93.642 92
SH9_1492R NR_115272.1_Shewanella_sediminis 93.898 91
SH9_1492R NR_118867.1_Shewanella_hanedai 88.193 99

COG annotation

The Figure represent the annotation by Dfast of the 8 research strains of Shewanella.sp. The COG categories evidence the high number of genes on Pdp11 genome asociated to transposase, defense mechanisms and replication and repair.

Transposon identification

The Table evidence the transposons identified in Shewanella.sp Pdp11 genome and the disrupted proteina by transposase.

genome coordinate start tpfinder end tpfinder transposase protein disrupt protein
Q_Shewanella_putrefaciens_Pdp11:850951:856278 2033 3326 tr|A0A883CDA5|A0A883CDA5_9GAMM tr|A0A6N3J937|A0A6N3J937_SHESW
Q_Shewanella_putrefaciens_Pdp11:1261471:1266798 1992 3309 tr|A0A883CDA5|A0A883CDA5_9GAMM tr|A0A6N3J937|A0A6N3J937_SHESW
Q_Shewanella_putrefaciens_Pdp11:1906106:1911827 2000 3723 tr|A0A2K9AH24|A0A2K9AH24_9GAMM tr|A0A501XG19|A0A501XG19_9GAMM
Q_Shewanella_putrefaciens_Pdp11:2693976:2700579 1969 4609 tr|A0A2K8ZWT8|A0A2K8ZWT8_9GAMM tr|A0A811T1P6|A0A811T1P6_9GAMM
Q_Shewanella_putrefaciens_Pdp11:2990403:2995648 1999 3241 tr|A0A2K8ZWA4|A0A2K8ZWA4_9GAMM tr|A0A2K9AEB1|A0A2K9AEB1_9GAMM
Q_Shewanella_putrefaciens_Pdp11:3053373:3058616 2049 3244 tr|A0A2K8ZZ67|A0A2K8ZZ67_9GAMM tr|A0A9E6JBE3|A0A9E6JBE3_9GAMM
Q_Shewanella_putrefaciens_Pdp11:3073685:3079406 1999 3725 tr|A0A2K9AH24|A0A2K9AH24_9GAMM tr|A0A501XG19|A0A501XG19_9GAMM
Q_Shewanella_putrefaciens_Pdp11:4349020:4355949 1959 3354 tr|A0A2K8ZPD2|A0A2K8ZPD2_9GAMM tr|A0A9E9D2T8|A0A9E9D2T8_9GAMM

Transposon comparison

The Table evidence the transposons identified in Shewanella.sp Pdp11. The transposase sequence correspond to others coordinate of transposon by blastn

start_transposase 1 start_transposase 2 identity length coverage
1261471 1261471 100.00 1196 100
1261471 1261471 100.00 1243 100
1261471 1261471 100.00 1294 100
1261471 1261471 100.00 1318 100
1261471 1261471 100.00 1396 100
1261471 1261471 100.00 1724 100
1261471 1261471 100.00 1727 100
1261471 1261471 100.00 2641 100
1261471 850951 100.00 1196 100
1261471 850951 100.00 1294 100
1906106 1906106 100.00 1196 100
1906106 1906106 100.00 1243 100
1906106 1906106 100.00 1294 100
1906106 1906106 100.00 1318 100
1906106 1906106 100.00 1396 100
1906106 1906106 100.00 1724 100
1906106 1906106 100.00 1727 100
1906106 1906106 100.00 2641 100
1906106 3073685 100.00 1196 100
1906106 3073685 100.00 1243 100
1906106 3073685 100.00 1294 100
2693976 2693976 100.00 1196 100
2693976 2693976 100.00 1243 100
2693976 2693976 100.00 1294 100
2693976 2693976 100.00 1318 100
2693976 2693976 100.00 1396 100
2693976 2693976 100.00 1724 100
2693976 2693976 100.00 1727 100
2693976 2693976 100.00 2641 100
2990403 2990403 100.00 1196 100
2990403 2990403 100.00 1243 100
2990403 2990403 100.00 1294 100
2990403 2990403 100.00 1318 100
2990403 2990403 100.00 1396 100
2990403 2990403 100.00 1724 100
2990403 2990403 100.00 1727 100
2990403 2990403 100.00 2641 100
3053373 2990403 99.75 1198 100
3053373 3053373 100.00 1196 100
3053373 3053373 100.00 1243 100
3053373 3053373 100.00 1294 100
3053373 3053373 100.00 1318 100
3053373 3053373 100.00 1396 100
3053373 3053373 100.00 1724 100
3053373 3053373 100.00 1727 100
3053373 3053373 100.00 2641 100
3073685 1906106 100.00 1196 100
3073685 1906106 100.00 1243 100
3073685 1906106 100.00 1294 100
3073685 3073685 100.00 1196 100
3073685 3073685 100.00 1243 100
3073685 3073685 100.00 1294 100
3073685 3073685 100.00 1318 100
3073685 3073685 100.00 1396 100
3073685 3073685 100.00 1724 100
3073685 3073685 100.00 1727 100
3073685 3073685 100.00 2641 100
4349020 4349020 100.00 1196 100
4349020 4349020 100.00 1243 100
4349020 4349020 100.00 1294 100
4349020 4349020 100.00 1318 100
4349020 4349020 100.00 1396 100
4349020 4349020 100.00 1724 100
4349020 4349020 100.00 1727 100
4349020 4349020 100.00 2641 100
850951 1261471 100.00 1196 100
850951 1261471 100.00 1294 100
850951 850951 100.00 1196 100
850951 850951 100.00 1243 100
850951 850951 100.00 1294 100
850951 850951 100.00 1318 100
850951 850951 100.00 1396 100
850951 850951 100.00 1724 100
850951 850951 100.00 1727 100
850951 850951 100.00 2641 100

Probiotic and pathogenic strains comparison

This analysis were focused on pathogenic and probiotic strains comparison by Tarsynflow, which identified the specific genes on pathogenic and their absent on probiotic strain.

Entry protein names organism
A0A073KKM8 Membrane fusion protein (MFP) family protein Shewanella xiamenensis
A0A073KRP2 L-lactate permease Shewanella xiamenensis
A0A380B106 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) (Selenocysteine synthase) (Sec synthase) (Selenocysteinyl-tRNA(Sec) synthase) Shewanella morhuae
A0A3S4TAL8 histidine kinase (EC 2.7.13.3) Shewanella baltica
A0A811SYL8 histidine kinase (EC 2.7.13.3) Shewanella hafniensis
A0A073KJ64 CzcA family heavy metal efflux protein Shewanella xiamenensis
A0A073KSL3 Cytochrome c Shewanella xiamenensis
A0A073KW48 LuxR family transcriptional regulator Shewanella xiamenensis
A0A161WSP6 Endoribonuclease L-PSP/chorismate mutase-like domain-containing protein Shewanella baltica
A0A1E3UTG5 DUF4274 domain-containing protein Shewanella xiamenensis
A0A220US46 Two-component system response regulator Shewanella bicestrii
A0A2M7HTT6 Sodium:alanine symporter Shewanella sp. CG12_big_fil_rev_8_21_14_0_65_47_15
A0A2W5FYG4 DNA-binding response regulator Shewanella oneidensis
A0A448CK39 CDP-Glycerol:Poly(Glycerophosphate) glycerophosphotransferase Shewanella putrefaciens (Pseudomonas putrefaciens)
A0A5B8QSE5 TetR/AcrR family transcriptional regulator Shewanella decolorationis
A3D7Z8 Sodium/calcium exchanger membrane region Shewanella baltica (strain OS155 / ATCC BAA-1091)
V1DFI4 Fumarate reductase Shewanella decolorationis S12
V1DHD5 Cyclic nucleotide-binding protein Shewanella decolorationis S12

Complete genome comparison

The heatmap represent the variability of identity in Shewanella genus based on 120 complete genomes of NCBI. The probiotic Shewanella.sp Pdp11 had high similarity to Shewanella baltica complete genomes.

Genomic Island

The Mobilome analysis included the genomic island identification, Shewanella. sp Pdp11 and SdM1 present 13 Genomic Island, a high value respect to other Shewanella strains

Genomic Island in Shewanella.sp Pdp11

The Shewanella. sp Pdp11 present 13 Genomic Island asociated to diverse function

Island_start Island_end Length Gene_ID Locus Product
128432 144890 16458 secA LOCUS_01230 protein translocase subunit SecA
128432 144890 16458 ftsZ LOCUS_01270 cell division protein FtsZ
1350555 1360798 10243 groL LOCUS_11350 60 kDa chaperonin
1350555 1360798 10243 hipB LOCUS_11390 antitoxin HipB
1522675 1539963 17288 accADCB LOCUS_13110 carbamoyl phosphate synthase large subunit
1522675 1539963 17288 LOCUS_13150 diguanylate cyclase
1950568 1968484 17916 LOCUS_16670 cupin
1950568 1968484 17916 galR LOCUS_16710 transcriptional regulator
1950568 1968484 17916 celD LOCUS_16750 4-beta-D-glucan glucohydrolase
1987801 2001908 14107 LOCUS_16910 riboflavin-specific deaminase
1987801 2001908 14107 rpoD LOCUS_17030 RNA polymerase sigma factor RpoD
2501325 2527562 26237 ttpC LOCUS_21390 flagellar motor protein MotA
2501325 2527562 26237 ppiC LOCUS_21470 peptidyl-prolyl cis-trans isomerase
2501325 2527562 26237 LOCUS_21510 LysR family transcriptional regulator
2501325 2527562 26237 LOCUS_21550 subfamily M23B unassigned peptidase
2501325 2527562 26237 LOCUS_21590 RNA helicase
2674842 2703653 28811 LOCUS_22950 prolyl 4-hydroxylase subunit alpha
2674842 2703653 28811 LOCUS_23110 integrase
2987651 3023065 35414 LOCUS_25470 integrase
2987651 3023065 35414 LOCUS_25590 restriction modification system DNA specificity domain-containing protein
2987651 3023065 35414 LOCUS_25710 replication protein
3008370 3022327 13957 LOCUS_25710 replication protein
3040353 3063054 22701 ald LOCUS_26030 alanine dehydrogenase
3040353 3063054 22701 infC LOCUS_26070 translation initiation factor IF-3
3040353 3063054 22701 ribC LOCUS_26110 riboflavin synthase subunit alpha
3040353 3063054 22701 fdnI LOCUS_26150 formate dehydrogenase subunit gamma
3512513 3525569 13056 LOCUS_29950 nucleoid-associated protein
3512513 3525569 13056 LOCUS_29990 DUF2063 domain-containing protein
3512513 3525569 13056 LOCUS_30030 conjugal transfer protein TraR
4080518 4113038 32520 intA LOCUS_34550 integrase
4080518 4113038 32520 LOCUS_34590 type I restriction enzyme
4080518 4113038 32520 LOCUS_34630 DNA-binding protein
4319152 4408145 88993 LOCUS_36670 cyclic nucleotide-binding protein
4319152 4408145 88993 trhC LOCUS_36790 plasmid transfer protein
4319152 4408145 88993 LOCUS_36950 Mrr restriction system protein
4319152 4408145 88993 LOCUS_36990 helicase
4319152 4408145 88993 LOCUS_37110 integrase
4319152 4408145 88993 LOCUS_37150 GGDEF-domain containing protein
4319152 4408145 88993 infB LOCUS_37190 translation initiation factor IF-2
4319152 4408145 88993 tpiA LOCUS_37230 triosephosphate isomerase

Integration of GI and transposon Shewanella.sp Pdp11

The Imagen represent the integration of transposon on Genomic Island coordinate. Some research evidence that transposase protein were inserted in some specific genomic region such as genomic island.